Downregulation of a UDP-Arabinomutase Gene in Switchgrass (Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans

Jonathan D. Willis, James A. Smith, Mitra Mazarei, Ji Yi Zhang, Geoffrey B. Turner, Stephen R. Decker, Robert W. Sykes, Charleson R. Poovaiah, Holly L. Baxter, David G.J. Mann, Mark F. Davis, Michael K. Udvardi, Maria J. Peña, Jason Backe, Maor Bar-Peled, C. N. Stewart

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18 Scopus Citations


Background: Switchgrass (Panicum virgatum L.) is a C4 perennial prairie grass and a dedicated feedstock for lignocellulosic biofuels. Saccharification and biofuel yields are inhibited by the plant cell wall’s natural recalcitrance against enzymatic degradation. Plant hemicellulose polysaccharides such as arabinoxylans structurally support and cross-link other cell wall polymers. Grasses predominately have Type II cell walls that are abundant in arabinoxylan, which comprise nearly 25% of aboveground biomass. A primary component of arabinoxylan synthesis is uridine diphosphate (UDP) linked to arabinofuranose (Araf). A family of UDP-arabinopyranose mutase (UAM)/reversible glycosylated polypeptides catalyze the interconversion between UDP-arabinopyranose (UDP-Arap) and UDP-Araf. Results: The expression of a switchgrass arabinoxylan biosynthesis pathway gene, PvUAM1, was decreased via RNAi to investigate its role in cell wall recalcitrance in the feedstock. PvUAM1 encodes a switchgrass homolog of UDP-arabinose mutase, which converts UDP-Arap to UDP-Araf. Southern blot analysis revealed each transgenic line contained between one to at least seven T-DNA insertions, resulting in some cases, a 95% reduction of native PvUAM1 transcript in stem internodes. Transgenic plants had increased pigmentation in vascular tissues at nodes, but were otherwise similar in morphology to the non-transgenic control. Cell wall-associated arabinose was decreased in leaves and stems by over 50%, but there was an increase in cellulose. In addition, there was a commensurate change in arabinose side chain extension. Cell wall lignin composition was altered with a concurrent increase in lignin content and transcript abundance of lignin biosynthetic genes in mature tillers. Enzymatic saccharification efficiency was unchanged in the transgenic plants relative to the control. Conclusion: Plants with attenuated PvUAM1 transcript had increased cellulose and lignin in cell walls. A decrease in cell wall-associated arabinose was expected, which was likely caused by fewer Araf residues in the arabinoxylan. The decrease in arabinoxylan may cause a compensation response to maintain cell wall integrity by increasing cellulose and lignin biosynthesis. In cases in which increased lignin is desired, e.g., feedstocks for carbon fiber production, downregulated UAM1 coupled with altered expression of other arabinoxylan biosynthesis genes might result in even higher production of lignin in biomass.

Original languageAmerican English
Article number1580
Number of pages18
JournalFrontiers in Plant Science
Issue numberOCTOBER2016
StatePublished - 2016

Bibliographical note

Publisher Copyright:
© 2016 Willis, Smith, Mazarei, Zhang, Turner, Decker, Sykes, Poovaiah, Baxter, Mann, Davis, Udvardi, Peña, Backe, Bar-Peled and Stewart.

NREL Publication Number

  • NREL/JA-2700-67522


  • Biofuel
  • Hemicellulose arabinoxylan
  • Recalcitrance
  • Switchgrass
  • UDP-arabinopyranose mutase/reversible glycosylated polypeptide


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