TY - JOUR
T1 - Open Specy 1.0: Automated (Hyper)Spectroscopy for Microplastics
AU - Cowger, Win
AU - Karapetrova, Aleksandra
AU - Lincoln, Clarissa
AU - Chamas, Ali
AU - Sherrod, Hannah
AU - Leong, Nicholas
AU - Lasdin, Katherine
AU - Knauss, Christine
AU - Teofilovic, Vesna
AU - Arienzo, Monica
AU - Steinmetz, Zacharias
AU - Pimple, Sebastian
AU - Darjany, Lindsay
AU - Murphy-Hagan, Clare
AU - Moore, Shelly
AU - Moore, Charles
AU - Lattin, Gwen
AU - Gray, Andrew
AU - Kozloski, Rachel
AU - Bryska, Jeremiah
AU - Maurer, Benjamin
PY - 2025
Y1 - 2025
N2 - Microplastic spectral analysis is one of the most time-consuming processes in studying microplastic pollution, often requiring days per sample. Researchers are transitioning to automated batch and hyperspectral image analysis techniques to enhance efficiency. Open Specy, initially aimed at manual single-spectrum analysis, has now integrated automated methods. This updated version, Open Specy 1.0, introduces several new features, including two algorithms for automated processing (smoothing and particle compression), an extensive library containing over 40,000 open-source Raman and FTIR spectra, and two machine learning classifiers (logistic regression and k medoids) developed from this library. Furthermore, it includes a revamped user interface, an R package, and a benchmark data set for testing future advancements in automated techniques. Researchers evaluated various configurations for hyperspectral smoothing, particle identification, compression, and splitting, to achieve combined recovery rates between 50 and 150% particle counts, identities, and sizes with a coefficient of variation (CV) of less than 40% (the accredited standard). Mean absorbance times the standard deviation provided a consistent particle identification. Hyperspectral smoothing led to a 96% combined recovery rate and reduced variability (CV = 38%) compared to the 86% recovery (CV = 83%) of nonsmoothed controls. Additionally, compressing spectra for particles was significantly faster (>3x) and showed similar accuracy but with reduced variability than processing each pixel individually. Key challenges persist in automating spectral analysis, particularly in refining particle splitting algorithms, and improving identification routines to minimize false positives and negatives. New methods in sample preparation for better stabilization and dispersion of particles could overcome some of these issues.
AB - Microplastic spectral analysis is one of the most time-consuming processes in studying microplastic pollution, often requiring days per sample. Researchers are transitioning to automated batch and hyperspectral image analysis techniques to enhance efficiency. Open Specy, initially aimed at manual single-spectrum analysis, has now integrated automated methods. This updated version, Open Specy 1.0, introduces several new features, including two algorithms for automated processing (smoothing and particle compression), an extensive library containing over 40,000 open-source Raman and FTIR spectra, and two machine learning classifiers (logistic regression and k medoids) developed from this library. Furthermore, it includes a revamped user interface, an R package, and a benchmark data set for testing future advancements in automated techniques. Researchers evaluated various configurations for hyperspectral smoothing, particle identification, compression, and splitting, to achieve combined recovery rates between 50 and 150% particle counts, identities, and sizes with a coefficient of variation (CV) of less than 40% (the accredited standard). Mean absorbance times the standard deviation provided a consistent particle identification. Hyperspectral smoothing led to a 96% combined recovery rate and reduced variability (CV = 38%) compared to the 86% recovery (CV = 83%) of nonsmoothed controls. Additionally, compressing spectra for particles was significantly faster (>3x) and showed similar accuracy but with reduced variability than processing each pixel individually. Key challenges persist in automating spectral analysis, particularly in refining particle splitting algorithms, and improving identification routines to minimize false positives and negatives. New methods in sample preparation for better stabilization and dispersion of particles could overcome some of these issues.
KW - automation
KW - FTIR
KW - high-throughput analysis
KW - hyperspectral analysis
KW - K medoid
KW - logistic regression
KW - microplastics
KW - open access library
KW - Raman
KW - spectroscopy
U2 - 10.1021/acs.analchem.5c00962
DO - 10.1021/acs.analchem.5c00962
M3 - Article
SN - 0003-2700
VL - 97
SP - 17345
EP - 17356
JO - Analytical Chemistry
JF - Analytical Chemistry
IS - 32
ER -